PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_6EBD74330.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 200aa    MW: 21364.9 Da    PI: 12.0841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_6EBD74330.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001895117123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C + F ++  L  H++ H
  Traes_4DL_6EBD74330.2  95 FTCNYCQRKFFSSQALGGHQNAH 117
                            89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.6E-792122No hitNo description
PROSITE profilePS5015711.32395122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
RAAASKKRVR IRCPRSAARR RPTTTRRPTP PPAPSSPSTC RSPSPRPPPP PPRPPSRAPP  60
TATTAAGXPP TTAESSPTDS NNGGGQAARE PTRVFTCNYC QRKFFSSQAL GGHQNAHRRE  120
RTLARRAVHR LEAYPYGYAD VASLPLYGSP GLYPIGIQAH ASALQGAAAQ AERQQHQQQD  180
AAVLAAPARA RALLGPMPFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1520KKRVRIRCPRSAARRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751191e-163AK375119.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189445.13e-59zinc finger protein 7-like
TrEMBLA0A446QQ812e-70A0A446QQ81_TRITD; Uncharacterized protein
STRINGTraes_4DL_6EBD74330.21e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-19zinc-finger protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]