PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_7AC6C149F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 129aa    MW: 14054.7 Da    PI: 9.7045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_7AC6C149F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-052749123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C +C++ F+++  L  H++ H
  Traes_4DL_7AC6C149F.1 27 FSCCYCPRKFRTWQALGGHQNGH 49
                           89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.19E-52453No hitNo description
PROSITE profilePS501579.0992754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MGMETGDGLD LSLSLRQYSP PKFQRVFSCC YCPRKFRTWQ ALGGHQNGHK LQRDLAREAT  60
AVEELGKAAV DDHSAPPRYG AHAWGAGGRI HPRRHRQQGT GTGSGAASSG TRRGNQELAE  120
EAIDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178987.17e-92zinc finger protein 2-like
TrEMBLA0A3B6JNG72e-90A0A3B6JNG7_WHEAT; Uncharacterized protein
TrEMBLA0A453J5P32e-90A0A453J5P3_AEGTS; Uncharacterized protein
STRINGTraes_4DL_7AC6C149F.13e-91(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-12zinc finger protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]