PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_7E6EA625C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 92aa    MW: 10678.3 Da    PI: 8.5814
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_7E6EA625C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.12e-144987240
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                           ++kg +Ckks  lkkYCeCf+a+  Cs++CkC dCkN e
  Traes_4DL_7E6EA625C.1 49 HNKGWHCKKSGRLKKYCECFQANILCSKNCKCMDCKNFE 87
                           88999********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163416.96188IPR005172CRC domain
SMARTSM011141.7E-144889IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.8E-115186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
GSSSDTLYKE LWHACARPLI TVPRQGERIY HFPHVYMEQD ARAPSLPKHN KGWHCKKSGR  60
LKKYCECFQA NILCSKNCKC MDCKNFEGSE EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-11489183126Protein lin-54 homolog
5fd3_B3e-11489183126Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9966251e-36HE996625.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_60151.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150694.13e-26protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD13e-21TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A453J7152e-63A0A453J715_AEGTS; Uncharacterized protein
STRINGTraes_4DL_7E6EA625C.13e-64(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-23Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]