PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_964466BEC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 83aa    MW: 9787.31 Da    PI: 12.1969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_964466BEC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.6e-283180251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva++ifs  g+l+e+ss
  Traes_4DL_964466BEC.1 31 RIENKTTRQVTFTKRRNGLLKKAYELSLLCDAEVALVIFSGGGRLFEFSS 80
                           8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.5342282IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-392281IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-292382IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-312444IPR002100Transcription factor, MADS-box
CDDcd002652.08E-332782No hitNo description
PfamPF003196.4E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-314459IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-315980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
WRQKSNRRER ERKGGRGRRR KMGRGKVEIR RIENKTTRQV TFTKRRNGLL KKAYELSLLC  60
DAEVALVIFS GGGRLFEFSS SSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-222283162Myocyte-specific enhancer factor 2B
1tqe_Q3e-222283162Myocyte-specific enhancer factor 2B
1tqe_R3e-222283162Myocyte-specific enhancer factor 2B
1tqe_S3e-222283162Myocyte-specific enhancer factor 2B
6c9l_A3e-222283162Myocyte-specific enhancer factor 2B
6c9l_B3e-222283162Myocyte-specific enhancer factor 2B
6c9l_C3e-222283162Myocyte-specific enhancer factor 2B
6c9l_D3e-222283162Myocyte-specific enhancer factor 2B
6c9l_E3e-222283162Myocyte-specific enhancer factor 2B
6c9l_F3e-222283162Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2491455e-88AJ249145.1 Hordeum vulgare mRNA for MADS-box protein 7 (m7 gene).
GenBankAK2503445e-88AK250344.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78o03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178151.13e-35MADS-box transcription factor 1-like
SwissprotA2Y9P02e-30MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB82e-30MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A446SDI13e-36A0A446SDI1_TRITD; Uncharacterized protein
STRINGTraes_4DL_964466BEC.13e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-27AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]