PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_AA51A43E7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 433aa    MW: 46201.5 Da    PI: 8.5387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_AA51A43E7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05189212123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            y+C+ Cg++ s + +L+ H+ + H
  Traes_4DL_AA51A43E7.1 189 YPCKVCGEVLSKPQQLELHQAMkH 212
                            99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.224189217IPR007087Zinc finger, C2H2
PROSITE patternPS000280191212IPR007087Zinc finger, C2H2
SuperFamilySSF563996.91E-11214432No hitNo description
Gene3DG3DSA:3.90.228.103.1E-8245431IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAGGARCSSL LRGFLSLFFV MFLHIGHAGC CFSPGSASQQ HEEDDAGAAS SSSSKRRKIS  60
PLAFSPAVSS STGVEERAGA RRRARHVSSL ATSLRCYIHR IFSSAGHKNS VPGGEEQEEA  120
VTTTLSSPLA QSVTQRQASV VLSTPSSPCA SPFLSPMSPQ SLSVTPLVPC SPLATRQLSR  180
SFAARGDLYP CKVCGEVLSK PQQLELHQAM KHSLSELTHL DSSMNIIRMI FLAGWGLSPP  240
GAGYPPAVRR ILRIHHNPRA LSRFEEYRDL VRSRAARRCA GASGAVVEER CIADGNERLR  300
FHCATMLCSL GAGVCGSPYC CTCTILRHGF AGKQADVDGI ATYSSGWAAH ASLPDEVERE  360
FAFLXQVRRA MLVCRVVAGR VVRGVDGDGD KVGYDSMVPV PPGGGGRGGE DDGELLVFNP  420
RAVLPCFVIM YGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318150.0AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153470.10.0uncharacterized protein LOC109738783
TrEMBLA0A3B6IUB20.0A0A3B6IUB2_WHEAT; Uncharacterized protein
TrEMBLA0A446S8J90.0A0A446S8J9_TRITD; Uncharacterized protein
STRINGTraes_4DL_AA51A43E7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.12e-50C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]