PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_AE039EE10.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 171aa    MW: 19479.1 Da    PI: 4.367
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_AE039EE10.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.42.8e-1914782771
                E2F_TDP 27 lnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                           ++ va+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Traes_4DL_AE039EE10.1 14 FKLVADELVAEftdpnnnieppdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 78
                           5679****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013725.2E-14578IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-281583IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-131679IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.2E-161678IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.98E-2983170IPR014889Transcription factor DP, C-terminal
SMARTSM011386.6E-3185171IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.62E-3085170No hitNo description
PfamPF087811.8E-2886170IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVSWNGQPIL LLLFKLVADE LVAEFTDPNN NIEPPDPDNP NAQQYDEKNI RRRVYDALNV  60
LMAMDIISKD KKEIQWKGLP RTSINDIEEL QADLAGVKGR IEKKSAYLQE LQDQYLGMQN  120
LINRNEQLYG SGNIPTGGVA LPFILIQTRP HATVEVEISE DMQLVHFDFN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-2217833493PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169029.11e-110transcription factor-like protein DPB isoform X1
RefseqXP_020169030.11e-110transcription factor-like protein DPB isoform X2
SwissprotQ9FNY23e-80DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A453IS771e-109A0A453IS77_AEGTS; Uncharacterized protein
TrEMBLA0A453ISF31e-109A0A453ISF3_AEGTS; Uncharacterized protein
STRINGTraes_4DL_AE039EE10.11e-123(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-78Transcription factor DP
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]