PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_AE5093871.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family BBR-BPC
Protein Properties Length: 346aa    MW: 38543.8 Da    PI: 10.2523
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_AE5093871.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind349.29.6e-10713461301
              GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.......rernlalsekkaavaerd..................maf 60 
                            mdddgs + rn+g+ye     k nlglqlm s+a   rd+k+        +++ a +++ +++++rd                  m+f
  Traes_4DL_AE5093871.1   1 MDDDGSLSiRNWGFYETM---KGNLGLQLMPSVAggHRDTKPllpngtfLQHHNAPHHPPHSHHPRDygngepsggmpteppaihMDF 85 
                            9**************965...*************999*****999999955555699999**************************** PP

              GAGA_bind  61 lqrdkalae.rnkalverdnkllalllvensla..........................salpvgvqvlsgtksidslqqlsepqled 121
                            ++++++++  ++++ ++++++  + ++++++ +                          +++p+  +++++++ +++lq+     +++
  Traes_4DL_AE5093871.1  86 VRNEAWMHPsQHQHQHQHHHQNQHQQQHQHQHQhsreqkvlhavplgppghighpghavHHHPTDFGMMPDARGAHTLQM-----MQP 168
                            ********953333333333333333333333344779999999999999999999999999999999999999999999.....666 PP

              GAGA_bind 122 savelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlP 209
                            +  +++eeek+   p++e+++++  k+ +kkrq++++pk +k kk+kk  +++ ++ +++   +rs+ + k +++v+ng+++D+s++P
  Traes_4DL_AE5093871.1 169 QEPPVPEEEKIAP-PLVEEHSVVGSKPLVKKRQQGRQPKLPKPKKPKK-VATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIP 254
                            6666778776665.55666788888889999*****************.556667777777779************************ PP

              GAGA_bind 210 vPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
                            +PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkf
  Traes_4DL_AE5093871.1 255 TPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKF 342
                            **************************************************************************************** PP

              GAGA_bind 298 vtir 301
                            vtir
  Traes_4DL_AE5093871.1 343 VTIR 346
                            ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.5E-1711346IPR010409GAGA-binding transcriptional activator
PfamPF062174.4E-1181346IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDDGSLSIR NWGFYETMKG NLGLQLMPSV AGGHRDTKPL LPNGTFLQHH NAPHHPPHSH  60
HPRDYGNGEP SGGMPTEPPA IHMDFVRNEA WMHPSQHQHQ HQHHHQNQHQ QQHQHQHQHS  120
REQKVLHAVP LGPPGHIGHP GHAVHHHPTD FGMMPDARGA HTLQMMQPQE PPVPEEEKIA  180
PPLVEEHSVV GSKPLVKKRQ QGRQPKLPKP KKPKKVATPG EDGAPKARAP RSRGPLKPVE  240
MVINGIDFDI SRIPTPVCSC TGAPQQCYRW GAGGWQSACC TTSISTYPLP MNTKRRGARI  300
AGRKMSQGAF KKVLEKLAGE GYNLNNPIDL KTFWAKHGTN KFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5072140.0AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant.
GenBankAK3726720.0AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24.
GenBankAK3763890.0AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165863.10.0protein Barley B recombinant
SwissprotQ8GUC30.0BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A3B6JJM00.0A0A3B6JJM0_WHEAT; Uncharacterized protein
TrEMBLA0A453IJT40.0A0A453IJT4_AEGTS; Uncharacterized protein
STRINGTraes_4DL_AE5093871.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.15e-63basic pentacysteine 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]