PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_C5FFFD54A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 52aa MW: 5826.86 Da PI: 10.0221

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_C5FFFD54A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.6	1e-26	8	52	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kprl+WtpeLH+rFveav+qLGG++kAtPkti++lm+v+gLtl+h Traes_4DL_C5FFFD54A.1 8 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYH 52 79*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.402	5	52	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	6	52	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-12	7	52	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-18	8	51	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	10	49	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
LILSTDAKPR LKWTPELHDR FVEAVNQLGG PDKATPKTIM RLMGVPGLTL YH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	8	52	1	45	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	8	52	1	45	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	8	52	1	45	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	8	52	1	45	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	7	52	1	46	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366967	2e-67	AK366967.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190332.1	5e-31	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-27	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A453I6U9	4e-30	A0A453I6U9_AEGTS; Uncharacterized protein
STRING	EMT31949	2e-30	(Aegilops tauschii)
STRING	Traes_4DL_C5FFFD54A.1	5e-31	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20734	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	5e-30	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]