PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_D84567626.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 342aa    MW: 37575.3 Da    PI: 5.8138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_D84567626.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.5e-55231501129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+ePw+Lp k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgk
  Traes_4DL_D84567626.1  23 LPPGFRFHPTDEEIISHYLTPKALDHRFCS-GVIGEVDLNKCEPWHLPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGK 109
                            79*************************888.89***************99999*********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++ +g lvg+kktLvfy grap+gekt Wvmhe+rle
  Traes_4DL_D84567626.1 110 DKEIFRGRGVLVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 150
                            **************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6316173IPR003441NAC domain
PROSITE profilePS5100557.1923173IPR003441NAC domain
PfamPF023658.7E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSEASVLNQA EVEDAAAAAG LDLPPGFRFH PTDEEIISHY LTPKALDHRF CSGVIGEVDL  60
NKCEPWHLPG KAKMGEKEWY FFCHKDRKYP TGTRTNRATE SGYWKATGKD KEIFRGRGVL  120
VGMKKTLVFY LGRAPRGEKT GWVMHEFRLE GKLPHPLPRS AKDEWAVSKV FNKELTATNG  180
AMAAAEAGIE RVSSFGFIGD FLDSGELPPL MDPPLGGDVD EVIDFKSTSA YATGAHSGLQ  240
VKMEQHMPQQ PPHMMYSSPY FSLPAANSGD MSPAIRRYCK AEQVSGQTSA LSPSRETGLS  300
TDPNAAGCAE ISSAATPSSQ NQDFLDQFDE YPALNLADIW KY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-52121779172NAC domain-containing protein 19
3swm_B3e-52121779172NAC domain-containing protein 19
3swm_C3e-52121779172NAC domain-containing protein 19
3swm_D3e-52121779172NAC domain-containing protein 19
3swp_A3e-52121779172NAC domain-containing protein 19
3swp_B3e-52121779172NAC domain-containing protein 19
3swp_C3e-52121779172NAC domain-containing protein 19
3swp_D3e-52121779172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3762970.0AK376297.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120C21.
GenBankFR8197630.0FR819763.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC013 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162549.10.0NAC domain-containing protein 92-like
SwissprotQ9FK441e-90NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A3B6JIE60.0A0A3B6JIE6_WHEAT; Uncharacterized protein
TrEMBLA0A453I6G20.0A0A453I6G2_AEGTS; Uncharacterized protein
STRINGTraes_4DL_D84567626.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.29e-80Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]