PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_D96E9236F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 164aa    MW: 17491.2 Da    PI: 10.1332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_D96E9236F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-13104141445
                    AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                            +G+r+++ +g+W+AeIrdp     + +r +lg+f+ta++Aa+a
  Traes_4DL_D96E9236F.1 104 HGIRQRP-WGKWAAEIRDPH----KgTRAWLGTFDTADDAARA 141
                            6******.**********72....35***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.054102159IPR001471AP2/ERF domain
SMARTSM003802.1E-11102147IPR001471AP2/ERF domain
PRINTSPR003671.6E-9103114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-20104144IPR001471AP2/ERF domain
PfamPF008473.8E-7104141IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-13104143IPR016177DNA-binding domain
PRINTSPR003671.6E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MCGGAILAEL IPPSAGRASK QVAAGRASPK KAGKSKGQKY GSVADVDDFE AAFENFDDDL  60
DLQAEEDGDD HVVFASRPAF SPAYDGGRRA VPAASKKKSV RPLHGIRQRP WGKWAAEIRD  120
PHKGTRAWLG TFDTADDAAR AXQQGQGQLP RRGQGRGAPA PRQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023834e-78DQ102383.2 Hordeum vulgare root abundant factor (RAF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175335.13e-95ethylene-responsive transcription factor 1-like
TrEMBLA0A3B6JPR13e-94A0A3B6JPR1_WHEAT; Ethylene response factor
STRINGTraes_4DL_D96E9236F.11e-112(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.34e-18related to AP2 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]