PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_DF1F43E16.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 451aa    MW: 49816.9 Da    PI: 7.9485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_DF1F43E16.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-053456123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y C+ C+k F r  nL+ H r H
  Traes_4DL_DF1F43E16.1 34 YICEVCHKGFQRDQNLQLHRRGH 56
                           89*******************88 PP
2zf-C2H211.10.0013110132123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC  C+k +  +s+ k H + +
  Traes_4DL_DF1F43E16.1 110 WKCDRCSKKYAVQSDWKAHTKIC 132
                            58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.51E-73356No hitNo description
Gene3DG3DSA:3.30.160.602.2E-53356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7413456IPR007087Zinc finger, C2H2
SMARTSM003550.0383456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
SMARTSM003556875105IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-498131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.51E-7105130No hitNo description
SMARTSM00355230110130IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPVVKKRRGH PGNPDPDVEV VALSPKTLVA TNRYICEVCH KGFQRDQNLQ LHRRGHNLPW  60
KLKQRSSTDA KKKVYICPEV TCPHHDATRA LGDLTGIKKH FSRKHGEKKW KCDRCSKKYA  120
VQSDWKAHTK ICGTKEYRCD CGTIFSRKDS FITHRAFCDV LAEDNSRVNH SLATMVGSLH  180
GQHDMYSHGV PSPTDMVANM SSNDHNSDMH LRSLSPYALI TRNTALFSNQ IPPKDPGFPL  240
DGSASGYPYM SMNSPYMSAT ALLQKAAEMG AKTSQDPISP LLLKGFANNF TSARDHMGIS  300
SGSQGDSMGN SAANSVCMKA AEDESMNGHN NILINSAWTS GMMTPTTVPL IGLMNNPFSM  360
RQEKESPQIM PDIQTQHNRQ ENISGVGDAG LTQDFLGLGG NGNLDISSGT YNTDVTALSY  420
SDEQQKNQEH MYSYHESSLD STALDKPMWD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32106169366Zinc finger protein JACKDAW
5b3h_F1e-32106169366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163244.10.0protein indeterminate-domain 9-like
TrEMBLA0A3B6JQ060.0A0A3B6JQ06_WHEAT; Uncharacterized protein
STRINGTraes_4DL_DF1F43E16.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]