PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_EB6D912CB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 94aa    MW: 9454.57 Da    PI: 4.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_EB6D912CB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-071371655
                           HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +N+ ++ Lr l+P++   + ++ + a+++  A++Y+k+L+
  Traes_4DL_EB6D912CB.1  1 MNDHLASLRALIPSD---YIPRGDQATVVGGAIDYVKQLE 37
                           8**************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.62E-6137No hitNo description
SuperFamilySSF474597.2E-8153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-6140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-5137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.296136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MNDHLASLRA LIPSDYIPRG DQATVVGGAI DYVKQLEQQL VALQALAAAH RGEGPVGTAA  60
TAASDGVFVS PQYTSFSQAG GVGGGVDVEA MAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554701e-116AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151391.13e-58transcription factor bHLH57-like
TrEMBLA0A3B6JR562e-57A0A3B6JR56_WHEAT; Uncharacterized protein
STRINGTraes_4DL_EB6D912CB.13e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-12bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]