PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_F647D6077.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 49aa    MW: 5564.41 Da    PI: 9.8464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_F647D6077.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-081642127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ykt +C+ fa+   C+yG rC+F H+p
  Traes_4DL_F647D6077.1 16 YKTLPCQMFAAASGCPYGHRCHFRHSP 42
                           9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-12942IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-91141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8311543IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-41542IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-51642IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
AHGLQEMRPV IRHPRYKTLP CQMFAAASGC PYGHRCHFRH SPAPTAQSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186682e-49AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372672e-49AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149592e-49AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-49CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.11e-28putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN84e-24C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLM8D6D41e-27M8D6D4_AEGTA; Putative zinc finger CCCH domain-containing protein 21
STRINGTraes_4BL_58F4541EF.13e-29(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-19C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]