PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_F822F371E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 201aa    MW: 21875.7 Da    PI: 9.2444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_F822F371E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11121168355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ + f  L +++P +     kK +K + L  +++Y+k+L+
  Traes_4DL_F822F371E.2 121 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKLSLLGSTIDYVKQLE 168
                            5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-15121185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-9122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-10123172No hitNo description
SMARTSM003531.0E-10124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MYQQEGGPVP VPGREQQFAE PPLPGREAQC YTPPMAIPMF SPSRSSNFPS FGGSSSLPNL  60
PFGSATVKNE LGQPSPPPSS NFLSFGPGQA STLNFSGWQR DGVQGTMQQL QAPERRGRAP  120
QEHVIAERKR REKLQQQFVS LATIVPGLKK TDKLSLLGST IDYVKQLEEK VKALEQGSRR  180
PSESMVFDSK CCISAPNNDA A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERKRRE
2127132RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150236.11e-143transcription factor bHLH66-like
TrEMBLA0A3B6JP291e-143A0A3B6JP29_WHEAT; Uncharacterized protein
STRINGEMT031291e-132(Aegilops tauschii)
STRINGTraes_4DL_F822F371E.21e-144(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-19bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]