PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_050789E2A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 40aa    MW: 4317.86 Da    PI: 9.8161
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_050789E2A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS31.13e-103382055
                   GRAS 20 aqalLarlselaspdgdpmqRlaayfteALaarlar 55
                           a++lL ++++++ p+gd++qRla++f+e+L+arla+
  Traes_4DS_050789E2A.1  3 ATELLRQIKQHSGPTGDATQRLAHCFAEGLEARLAG 38
                           899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.103140IPR005202Transcription factor GRAS
PfamPF035141.0E-7338IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 40 aa     Download sequence    Send to blast
RGATELLRQI KQHSGPTGDA TQRLAHCFAE GLEARLAGTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-51HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161472.11e-18scarecrow-like protein 34
TrEMBLA0A446X6V52e-17A0A446X6V5_TRITD; Uncharacterized protein
STRINGTraes_4DS_050789E2A.11e-20(Triticum aestivum)
STRINGTRIUR3_06177-P19e-18(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.14e-15GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]