PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_11C3B0459.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 217aa MW: 23855.5 Da PI: 6.2695

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_11C3B0459.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.3	5.1e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+C+++Cv+ap+f++eq +++fa++hk+FGasn +kll +lp ++r++a+ ++ yeA+ar++dPvyG+v++i++lqqq+ Traes_4DS_11C3B0459.1 7 PCGACKFLRRRCVNGCVFAPHFCHEQgAAHFAAIHKVFGASNASKLLMSLPATDRREAAVTISYEAQARQHDPVYGCVAHIFALQQQV 94 7***********************89******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+a+l++lk++ Traes_4DS_11C3B0459.1 95 VNLQAQLESLKAQ 107 *****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.459	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-36	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MTGFSSPCGA CKFLRRRCVN GCVFAPHFCH EQGAAHFAAI HKVFGASNAS KLLMSLPATD 60 RREAAVTISY EAQARQHDPV YGCVAHIFAL QQQVVNLQAQ LESLKAQEPV QGHTNTCSAS 120 SPEEDSIKAK VMAYQKGEAR MPQPGHSVKI ESESYFGNDG MACTSMQYSS QDYNSSHVYT 180 TGYPASFNDD SIHSSTMFPI DMQEYLQESG YYDTEGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	3	103	7	106	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	3	103	7	106	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182029.1	1e-163	LOB domain-containing protein 14-like
TrEMBL	A0A3B6JC48	1e-162	A0A3B6JC48_WHEAT; Uncharacterized protein
STRING	Traes_4DS_11C3B0459.1	1e-163	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-52	LBD family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]