PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_276818E4F.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 159aa MW: 17134.7 Da PI: 11.4539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_276818E4F.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	48	70	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg++F + L H +H Traes_4DS_276818E4F.1 48 YECRTCGRRFATFQALGGHRTSH 70 99**********99998888777 PP
2	zf-C2H2	12.5	0.00044	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C F++ L H+r+H Traes_4DS_276818E4F.1 98 HRCGTCRHAFPTGQALGGHMRRH 120 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.1E-10	47	72	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.949	48	75	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.72E-7	48	120	No hit	No description
SMART	SM00355	0.22	48	70	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	50	70	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-8	98	122	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.59	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MTKDVASGDT QSPIKLIELL LKLSSPAASS RVIGKNKRVQ LQAAGGAYEC RTCGRRFATF 60 QALGGHRTSH KRPRVRAHGL DLLLGARPGK ARAPMQLHRC GTCRHAFPTG QALGGHMRRH 120 RPAVAAATWT ETATSSSTSC LSVSAQHDDA DWPTLIQFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134045	3e-35	AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBank	AK062491	3e-35	AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBank	AK105226	3e-35	AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBank	AP014967	3e-35	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	AY305866	3e-35	AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBank	CP012619	3e-35	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBank	CT833322	3e-35	CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152686.1	1e-112	zinc finger protein ZAT11-like
TrEMBL	A0A3B6JFY9	1e-112	A0A3B6JFY9_WHEAT; Uncharacterized protein
STRING	Traes_4DS_276818E4F.1	1e-113	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6730	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	3e-22	C2H2 family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]