PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_4BC902279.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 236aa    MW: 26437.2 Da    PI: 7.0175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_4BC902279.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124769123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C + F++   L  H+++H
  Traes_4DS_4BC902279.1 47 YSCTFCQREFRSAQALGGHMNVH 69
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-64473No hitNo description
Gene3DG3DSA:3.30.160.607.8E-44572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00534769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1984774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEQLAKCRGI PAWAAAYASD PSSSSWEERA FARDAAADLL VWPPRSYSCT FCQREFRSAQ  60
ALGGHMNVHR RDRARLRHGD DDQAQQEQAD EPHEDDSTSA MYKQLELFRN PSTTTPSSHL  120
STINKERNNN KVAVSIAVRD QEAADHQYDN RQDLELSGRR KRRRVNQAPV ALASPYEQGA  180
FLDHSKVIMK TISNPSSSSL NPHVDQGEVD LYLKKQGLVD LELRLGANPN VASHAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134269229superman protein
2l1o_A4e-134269229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163RKRRR
2160164KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172186.11e-154probable transcriptional regulator RABBIT EARS
TrEMBLA0A3B6JIZ81e-175A0A3B6JIZ8_WHEAT; Uncharacterized protein
STRINGTraes_4DS_4BC902279.11e-176(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-20C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]