PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_581BE0CB7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 87aa    MW: 9982.3 Da    PI: 5.8279
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_581BE0CB7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.3e-1122591954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                           F+   ++yps +e+ +LA ++gLt rq+++WF N R +
  Traes_4DS_581BE0CB7.1 22 FNHflDPYPSDSEKLRLAVSTGLTRRQISNWFINARVR 59
                           5544589*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.5E-9367IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-26869IPR009057Homeodomain-like
SuperFamilySSF466891.41E-181072IPR009057Homeodomain-like
CDDcd000869.18E-131464No hitNo description
PfamPF059203.3E-182059IPR008422Homeobox KN domain
PROSITE profilePS5007111.9362263IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
QVCKPLRGLP EGSVAVLRAW LFNHFLDPYP SDSEKLRLAV STGLTRRQIS NWFINARVRL  60
WKPMVEEMYA DEFSDVSSRD DDAAPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-17967563Homeobox protein Meis2
3k2a_B2e-17967563Homeobox protein Meis2
4xrm_A2e-17967563Homeobox protein Meis2
4xrm_B2e-17967563Homeobox protein Meis2
5bng_A2e-17967159Homeobox protein Meis2
5bng_B2e-17967159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733881e-100AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149612.12e-57BEL1-like homeodomain protein 3
SwissprotQ1PFD11e-35BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A453H2J92e-56A0A453H2J9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_581BE0CB7.11e-58(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.14e-38BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]