PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_71AA74F78.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 78aa    MW: 8606.62 Da    PI: 10.8088
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_71AA74F78.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073292955
                           HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox 29 ereeLAkklgLterqVkvWFqNrRake 55
                           e+  LA+++gL++rq+ +WF N+R ++
  Traes_4DS_71AA74F78.1  3 EKLALAESTGLDTRQINNWFINQRKRH 29
                           6678********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.657132IPR001356Homeobox domain
CDDcd000861.15E-8132No hitNo description
Gene3DG3DSA:1.10.10.607.1E-14233IPR009057Homeodomain-like
SuperFamilySSF466892.48E-10239IPR009057Homeodomain-like
PfamPF059208.6E-10328IPR008422Homeobox KN domain
PROSITE patternPS000270730IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
EPEKLALAES TGLDTRQINN WFINQRKRHW RPAPPAMGSR LQHIDAGAST SSSPAVLGME  60
GQHFTRRSGY PDGGPLRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352059e-31BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406229e-31BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBankKJ7275719e-31KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175442.15e-50homeobox protein knotted-1-like 4
SwissprotQ75LX73e-23KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A3B6JDK22e-48A0A3B6JDK2_WHEAT; Uncharacterized protein
STRINGTraes_4DS_71AA74F78.12e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-15KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]