PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_7F3D9E4D9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 372aa    MW: 40451 Da    PI: 6.1879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_7F3D9E4D9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12165212355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k Lq
  Traes_4DS_7F3D9E4D9.2 165 QDHIMAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 212
                            6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.77162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17166228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.68E-14167216No hitNo description
SMARTSM003534.4E-15168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDATLEQYT EQQIAVAFGQ GEMEAAALMQ QQQYAAAAAA  60
GEHRPRKAAK VNTSWDSCVT EQGSPADSSS PTILSFGGHG HADAFAKAPQ APSAAAAAYY  120
GAAPVKPKQE VDAGGVAPFQ QVKRSYDAMV AEPARAPSRP AAQNQDHIMA ERKRREKLSE  180
RFIALSKIVP GLKKMDKASV LGDAIKYVKT LQEQVKGMEE VARRRPVESA VLVKKSQLAA  240
EEDDGSSCDE NFEGADAGLP EIEARMSDRT VLVKIHCENR RGVLVAALSE LESIDLAIMN  300
TNVLPFTASS IDITIMATGR RGLLVVSQGH RQEATSSVQV VAMKDLLLIK SNLELWLLFL  360
SFFSPLASRI WG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
2171176RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675910.0AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152395.10.0transcription factor bHLH18-like
TrEMBLA0A3B6JGA20.0A0A3B6JGA2_WHEAT; Uncharacterized protein
STRINGTraes_4DS_7F3D9E4D9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-49bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]