PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_9C2FD9F381.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 385aa MW: 40626.6 Da PI: 7.5353

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_9C2FD9F381.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	138.3	6.2e-43	89	242	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++ +a+++ a+s + as + Traes_4DS_9C2FD9F381.2 89 VAKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTVPANFStLAASLRPGAS----S 171 689************************************************************9999988854444444444....3 PP TCP 89 kaaksaa.kskksqksaasalnlakesr........................akarararertrekmrikn 134 +aa++++ ++++q++ a++l ++ +++ a + +r+r+r++++ ++++ Traes_4DS_9C2FD9F381.2 172 RAAPFQHhLQHQPQHDVAAMLGFHGHHQhqllppppqqqhhhqhpeapqdpgAGEFMRKRYREADDLFKDT 242 33333333666666666666666665554566666666666555555555559999999999988887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.9E-37	94	237	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.325	94	148	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAPAATGATP PPPFMGSLAM 60 VPAATPAGAQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ 120 LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRAAPFQHHL 180 QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK 240 DTGRHQDPEG GGEPAQKPRP APPPTAVSGA MWAVAPNSGA GGGGGAFWMQ PAWAFGAGNT 300 VQAPLQFISR SSFPGGMGDT NLGMLAGLNS CGRSTGGEQQ QHQHQQQPQQ EEEEGQPPEM 360 DQHRRGSNSA GANGHEAGHS AASPQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAPAATGATP PPPFMGSLAM  60
VPAATPAGAQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRAAPFQHHL  180
QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK  240
DTGRHQDPEG GGEPAQKPRP APPPTAVSGA MWAVAPNSGA GGGGGAFWMQ PAWAFGAGNT  300
VQAPLQFISR SSFPGGMGDT NLGMLAGLNS CGRSTGGEQQ QHQHQQQPQQ EEEEGQPPEM  360
DQHRRGSNSA GANGHEAGHS AASPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361002	0.0	AK361002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130G02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194047.1	0.0	transcription factor PCF3-like
Swissprot	Q53PH2	4e-98	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3B6JE74	0.0	A0A3B6JE74_WHEAT; Uncharacterized protein
TrEMBL	A0A453HHX7	0.0	A0A453HHX7_AEGTS; Uncharacterized protein
STRING	Traes_4DS_9C2FD9F381.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	5e-50	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]