PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_B63507774.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 138aa    MW: 14955.2 Da    PI: 9.9643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_B63507774.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-056384223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           kC +C++ F ++  L+rH r+H
  Traes_4DS_B63507774.1 63 KCAKCPREFCSSVALRRHTRVH 84
                           7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0146284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAASGSGSGS GQIQPLKIPD AVVALAQAAA KANNSSNTAA ADATDKYLPG WPLFSPPKMQ  60
LTKCAKCPRE FCSSVALRRH TRVHRRALKI DKDFPKNRDH LAAFWDKLTV DQAQAILSLE  120
GVAIEVTTID PYLQNIRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559141e-170AK355914.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160651.16e-71uncharacterized protein LOC109745950
TrEMBLA0A3B6JE214e-83A0A3B6JE21_WHEAT; Uncharacterized protein
STRINGTraes_4DS_B63507774.12e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.24e-26C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]