PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_B98800798.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 244aa    MW: 27048.8 Da    PI: 8.5988
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_B98800798.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.5e-3327554128
                    NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ +g+lvg+kktLvfy grapkgekt+Wvmheyr+
  Traes_4DS_B98800798.1   2 GEKEWYFFSMRDRKYPTGIRTNRATESGYWKTTGKDKEIFH-GGRLVGMKKTLVFYGGRAPKGEKTSWVMHEYRI 75 
                            579**************************************.*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.616196IPR003441NAC domain
SuperFamilySSF1019416.28E-39296IPR003441NAC domain
PfamPF023658.2E-16675IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGEKEWYFFS MRDRKYPTGI RTNRATESGY WKTTGKDKEI FHGGRLVGMK KTLVFYGGRA  60
PKGEKTSWVM HEYRIQNKFP YKPNKEEWVV CRVFKKSQIV KMRHPQDSPD MDSPCNDAHA  120
SLGELGEIDV SSILGSFTPA SANAPGDNFG HRIDMGAYMN WLAAANQGAA AMLPWAAAAA  180
PGLLGTVFSA NPAMQKALAP FAGCSQLPRD VGGDALFGNA MAKVDMECEQ PPQLEMHEST  240
WRTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-3319668165NO APICAL MERISTEM PROTEIN
1ut4_B8e-3319668165NO APICAL MERISTEM PROTEIN
1ut7_A8e-3319668165NO APICAL MERISTEM PROTEIN
1ut7_B8e-3319668165NO APICAL MERISTEM PROTEIN
3swm_A1e-3219671168NAC domain-containing protein 19
3swm_B1e-3219671168NAC domain-containing protein 19
3swm_C1e-3219671168NAC domain-containing protein 19
3swm_D1e-3219671168NAC domain-containing protein 19
3swp_A1e-3219671168NAC domain-containing protein 19
3swp_B1e-3219671168NAC domain-containing protein 19
3swp_C1e-3219671168NAC domain-containing protein 19
3swp_D1e-3219671168NAC domain-containing protein 19
4dul_A8e-3319668165NAC domain-containing protein 19
4dul_B8e-3319668165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631710.0AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181735.10.0protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A3B6JGA90.0A0A3B6JGA9_WHEAT; Uncharacterized protein
TrEMBLA0A453HCV20.0A0A453HCV2_AEGTS; Uncharacterized protein
TrEMBLA0A453HDI90.0A0A453HDI9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_B98800798.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79193450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-56NAC domain containing protein 58
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]