PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_CFC487CE5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 145aa    MW: 16273 Da    PI: 8.0663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_CFC487CE5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.51e-2153108258
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve +  dp++  ++Y g H+h
  Traes_4DS_CFC487CE5.2  53 EDGYQWKKYGQKFIKNIQKIRSYFRCRDKRCGAKKKVEWQPGDPNL-RVVYDGAHQH 108
                            7****************************************99985.899******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.23447111IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-2350111IPR003657WRKY domain
SuperFamilySSF1182901.44E-2050111IPR003657WRKY domain
SMARTSM007742.4E-2152110IPR003657WRKY domain
PfamPF031062.1E-2053108IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MYTMIHESYI SMYRWLICRG NEGGERGHHG DEEEQQQGAW AEAAGGQPLV MPEDGYQWKK  60
YGQKFIKNIQ KIRSYFRCRD KRCGAKKKVE WQPGDPNLRV VYDGAHQHGS PSSNGGGQDA  120
DGAANRYDLS TQYFGGAGAP TPQTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063891e-101JQ806389.1 Hordeum vulgare WRKY transcript factor 48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162457.12e-89probable WRKY transcription factor 2 isoform X1
RefseqXP_020181477.12e-89probable WRKY transcription factor 2 isoform X1
TrEMBLA0A453H0T61e-88A0A453H0T6_AEGTS; Uncharacterized protein
STRINGTraes_4DS_CFC487CE5.21e-105(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-14WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]