PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_DA077BB06.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 166aa    MW: 17767.2 Da    PI: 8.1399
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_DA077BB06.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.82.1e-44101091100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C+++Cv+apyfp+ +p++fa vhk+FGasn++kll+++p e+r da+sslvyeA+ar+rdP+yG+vg i++lq+q+e
  Traes_4DS_DA077BB06.1  10 PCAACKLLRRRCSPGCVFAPYFPSGEPHRFASVHKVFGASNISKLLQEIPAEHRGDAVSSLVYEANARVRDPIYGCVGAITSLQRQVE 97 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+++lal+++e
  Traes_4DS_DA077BB06.1  98 SLQTQLALAQAE 109
                            ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.2569110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4310107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKEAAAGVSP CAACKLLRRR CSPGCVFAPY FPSGEPHRFA SVHKVFGASN ISKLLQEIPA  60
EHRGDAVSSL VYEANARVRD PIYGCVGAIT SLQRQVESLQ TQLALAQAEM VRLRMANAYG  120
GGGSSASGSP SSMSSPTKAT PDHHHMAVDQ PGVMELELEC SRFWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-49911210113LOB family transfactor Ramosa2.1
5ly0_B3e-49911210113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699115e-99BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBankKJ7276505e-99KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181605.12e-98LOB domain-containing protein 4-like
SwissprotQ8LBW32e-54LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3B6JBX51e-117A0A3B6JBX5_WHEAT; Uncharacterized protein
STRINGTraes_4DS_DA077BB06.11e-120(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-56LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]