PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_F0A04A0EC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 143aa    MW: 16012.1 Da    PI: 9.5235
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_F0A04A0EC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.8e-175183133
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                           C++C++  Tp+WR gp g+ tLCnaCG++y+  
  Traes_4DS_F0A04A0EC.1 51 CTHCRVEGTPQWRTGPAGSGTLCNACGIRYKMG 83
                           *******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-124595IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7434582IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-1447107No hitNo description
Gene3DG3DSA:3.30.50.102.2E-144984IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.59E-1350106No hitNo description
PROSITE patternPS0034405176IPR000679Zinc finger, GATA-type
PfamPF003206.6E-155184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSAGAYDCNG DSNANDDKDK DYVLSHCKNG RGNGGPRPAR RQQKKTDGKI CTHCRVEGTP  60
QWRTGPAGSG TLCNACGIRY KMGKLFPEYR PSTSPEFGSL EHSNRHRNVE RIREKKMKVM  120
VPEVPVSPDA DDKVLLRVCK YER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149935.12e-89GATA transcription factor 8-like
TrEMBLA0A3B6JHL81e-101A0A3B6JHL8_WHEAT; Uncharacterized protein
TrEMBLA0A453HJ591e-100A0A453HJ59_AEGTS; Uncharacterized protein
STRINGTraes_4DS_F0A04A0EC.11e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-26GATA transcription factor 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]