PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_F74D72DF1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 74aa    MW: 8098 Da    PI: 6.8924
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_F74D72DF1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.81.3e-281263357
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                           + +Y+eCl+NhAa+lG++a DGC+E++p+   ++++aal CaACgCHRnFHR+  
  Traes_4DS_F74D72DF1.1 12 REVYRECLRNHAAKLGTYASDGCCEYTPD---DSQPAALLCAACGCHRNFHRKAF 63
                           568*************************8...6789****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-241462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-201561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.0E-231561IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.2871562IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALLCA ACGCHRNFHR  60
KAFLDGAASP GAAS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718757e-56EU971875.1 Zea mays clone 371882 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.14e-48zinc-finger homeodomain protein 11-like
SwissprotA2XLF41e-35ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-35ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6INY39e-47A0A3B6INY3_WHEAT; Uncharacterized protein
TrEMBLA0A3B6U0859e-47A0A3B6U085_WHEAT; Uncharacterized protein
TrEMBLA0A446RS909e-47A0A446RS90_TRITD; Uncharacterized protein
STRINGTraes_4AL_5659286D11.14e-47(Triticum aestivum)
STRINGTraes_4DS_F74D72DF1.14e-48(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.11e-18homeobox protein 32
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]