PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_047ABC9FC.1

Common Name

NFYA-A2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 130aa MW: 14578.7 Da PI: 10.8554

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_047ABC9FC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.3	1.9e-31	65	121	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh+hA+rR+Rg+gGrF Traes_5AL_047ABC9FC.1 65 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGTGGRF 121 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.1E-34	63	124	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.172	64	124	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.6E-28	67	121	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-24	67	89	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-24	98	121	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MEHSATIALQ SPLPEYNSRF EFGPGPSMMS SGYPSAEQCY GLLTTYAMKS TPGGRLLLPL 60 NATADAPIYV NAKQYEGILR RRRARAKVER ENQLVKGRKP YLHESRHRHA MRRARGTGGR 120 FLNTKKEGNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	65	129	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	114	RHRHAMRRAR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078749	0.0	KM078749.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182505.1	3e-76	nuclear transcription factor Y subunit A-10-like
Refseq	XP_020182506.1	3e-76	nuclear transcription factor Y subunit A-10-like
Refseq	XP_020182507.1	3e-76	nuclear transcription factor Y subunit A-10-like
Swissprot	Q8LFU0	2e-30	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A0A7LWR8	1e-88	A0A0A7LWR8_WHEAT; CCAAT-binding transcription factor B
STRING	Traes_5AL_047ABC9FC.1	3e-91	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	3e-25	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qu B, et al. A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input. Plant Physiol., 2015. 167(2): p. 411-23 [PMID:25489021] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]