PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_14D9A9844.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 305aa    MW: 33360.6 Da    PI: 5.4959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_14D9A9844.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-204493255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+G+r+++ +g+W+AeIrdps+     r++lg+++taeeAa+a++a ++k++g
  Traes_5AL_14D9A9844.2 44 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYDTAEEAARAYDAEARKIRG 93
                           69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.18444101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3244102IPR001471AP2/ERF domain
CDDcd000181.28E-3344103No hitNo description
SuperFamilySSF541711.31E-2244102IPR016177DNA-binding domain
SMARTSM003805.5E-3944107IPR001471AP2/ERF domain
PRINTSPR003678.2E-124556IPR001471AP2/ERF domain
PfamPF008471.6E-124593IPR001471AP2/ERF domain
PRINTSPR003678.2E-126783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
DCCATSFLLE LSCWDVLLSK NFIVDAVQRD GPAAKQVKRV RKNQYRGIRQ RPWGKWAAEI  60
RDPSKGVRVW LGTYDTAEEA ARAYDAEARK IRGKKAKVNF PEDAPTVQKS TLKPTAAKSA  120
KLAPPPKACE DEPFNHVSRG DNDLFAMFAF NDKKVPAKPA ESVDSLLPVK LKPPTETFGM  180
NMLSDQSSNS FGSTDFGWDD EAMTPDYTSV FVPNAAMPAY VEPAYLQGGA PKRLRNNFGV  240
AVLPQGNGAQ DIPAFDHEMK YSLPYVESSS DGSMDSLLLN GAMQNGASSG DLWSLDELFM  300
AAGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2044101563ATERF1
3gcc_A2e-2044101563ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6811910.0JN681191.1 Triticum aestivum ethylene responsive transcription factor 5a (ERF5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194933.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A3B6KIQ80.0A0A3B6KIQ8_WHEAT; Ethylene response factor
STRINGTraes_5AL_14D9A9844.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-29related to AP2 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]