PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_41B98AAEF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 204aa    MW: 23194.4 Da    PI: 7.4995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_41B98AAEF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.47.6e-4661351128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                            lppGfrFhPtd e v++yLk+k+ gkkl + e+i+ev++yk+ PwdL  +   ++++++ ew+fF+++dkk+++g+ +nr+t +gyWk
  Traes_5AL_41B98AAEF.1   6 LPPGFRFHPTDVEFVSYYLKRKIMGKKLFV-EAISEVELYKFAPWDLLiNhksCLQSKDLEWFFFCPHDKKNPKGSWTNRTTPNGYWK 92 
                            79*************************999.89**************6324556777888**************************** PP

                    NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++gkd ++   +++ vglkktL+f++g+apkg++tdWvm ey++
  Traes_5AL_41B98AAEF.1  93 TSGKDGTIDL-NSRIVGLKKTLIFHEGKAPKGNRTDWVMYEYKM 135
                            *********9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-493153IPR003441NAC domain
PROSITE profilePS5100546.9276158IPR003441NAC domain
PfamPF023652.5E-247134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSQTCLPPGF RFHPTDVEFV SYYLKRKIMG KKLFVEAISE VELYKFAPWD LLINHKSCLQ  60
SKDLEWFFFC PHDKKNPKGS WTNRTTPNGY WKTSGKDGTI DLNSRIVGLK KTLIFHEGKA  120
PKGNRTDWVM YEYKMEDETL VSTGFSKDAY VLSGLGPRIG VEDSQVESSA WVTAIVIREP  180
SAPQQSVQFS EHVNICSDEV AGLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-43213511140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3621611e-179AB362161.1 Hordeum vulgare subsp. vulgare mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200154.11e-121NAC domain-containing protein 13-like
SwissprotQ9FY823e-54NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A3B6KGB61e-151A0A3B6KGB6_WHEAT; Uncharacterized protein
STRINGTraes_5AL_41B98AAEF.11e-152(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.16e-63NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]