PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_637B13721.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 98aa    MW: 11300.7 Da    PI: 10.3521
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_637B13721.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.17.2e-1612434778
                           SSEEETTT--SS--S-STTTT-------S--- CS
                    SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78
                           +rfh l efDe+krsCr+rL++hn+rrrk+q 
  Traes_5AL_637B13721.2 12 ARFHLLAEFDEAKRSCRKRLDGHNRRRRKPQV 43
                           7****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.298141IPR004333Transcription factor, SBP-box
PfamPF031101.1E-81240IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-131246IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.2E-51228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MFVFLTINLC FARFHLLAEF DEAKRSCRKR LDGHNRRRRK PQVDSMTSGS FMTTQQGLYS  60
NAGTRFASFS APRPESSWSG IIKSEDSNPY YTTTHQIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12340KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178563.12e-53squamosa promoter-binding-like protein 18
SwissprotQ0J0K11e-35SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A446T8083e-66A0A446T808_TRITD; Uncharacterized protein
STRINGTraes_5AL_637B13721.28e-69(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.18e-16SBP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]