PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_6F7D1D441.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 124aa    MW: 13838.6 Da    PI: 9.8007
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_6F7D1D441.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-2752110259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D y+WrKYGqK++kgs++pr+YYrC+s  + p++k+ver++ d  ++++tYe++Hnh 
  Traes_5AL_6F7D1D441.1  52 SDSYSWRKYGQKPIKGSPHPRGYYRCSSIkDYPARKHVERCRGDAGMLNVTYENDHNHA 110
                            69************************99879***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-14749IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.6E-3140112IPR003657WRKY domain
PROSITE profilePS5081127.78346112IPR003657WRKY domain
SuperFamilySSF1182901.57E-2449112IPR003657WRKY domain
SMARTSM007741.3E-3051111IPR003657WRKY domain
PfamPF031067.0E-2353109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSETSACAPA SRKAAHKADD DGKCHCPKKK KPREKRVVRM PAVSDKVADI PSDSYSWRKY  60
GQKPIKGSPH PRGYYRCSSI KDYPARKHVE RCRGDAGMLN VTYENDHNHA QPLDLATLTA  120
NSEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-1939112274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654370.0EU665437.1 Triticum aestivum WRKY8 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156284.11e-83probable WRKY transcription factor 15
SwissprotQ9STX04e-45WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A3B6KPH14e-85A0A3B6KPH1_WHEAT; Uncharacterized protein
STRINGTraes_5AL_6F7D1D441.13e-87(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-40WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]