PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_78701B16C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 77aa    MW: 8626.03 Da    PI: 10.4503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_78701B16C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-063655120
                           EEETTTTEEESSHHHHHHHH CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                           ++Cp C k+F+r  n++ H+
  Traes_5AL_78701B16C.1 36 FSCPVCFKTFNRYNNMQMHM 55
                           89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.38E-63159No hitNo description
Gene3DG3DSA:3.30.160.605.1E-73655IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.643663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
AVAPVLGFAS TPIGRLNKGQ YWIPTPTQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS  60
QYRKGPESLR GIQPTAM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568141e-112AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180661.15e-50zinc finger protein WIP2-like
SwissprotQ9SVY16e-40ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A453L3K04e-54A0A453L3K0_AEGTS; Uncharacterized protein
STRINGTraes_5AL_78701B16C.18e-52(Triticum aestivum)
STRINGTraes_5DL_51643AC9F.13e-50(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15363511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-42C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]