PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_9775A72F6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 88aa MW: 10651.1 Da PI: 9.7231

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_9775A72F6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.4	5.5e-14	20	78	1	59
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetr 59 +fYn+YA e GFsvrk + + + n +i+ r++vCs+eg re+++ k++ke r+r+ + Traes_5AL_9775A72F6.1 20 EFYNKYALEKGFSVRKGYVEWDEANVKIIPRKLVCSREGWREDKHMKRKKEDRNRKPRK 78 6*******************************************999777777666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-12	20	77	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MAEYIDIVSE MFDSDDEGFE FYNKYALEKG FSVRKGYVEW DEANVKIIPR KLVCSREGWR 60 EDKHMKRKKE DRNRKPRKES VASRKRTL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182137.1	3e-33	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453A3Y5	1e-30	A0A453A3Y5_AEGTS; Uncharacterized protein
TrEMBL	A0A453ADE7	1e-30	A0A453ADE7_AEGTS; Uncharacterized protein
TrEMBL	A0A453MYE8	2e-31	A0A453MYE8_AEGTS; Uncharacterized protein
STRING	Traes_5AL_9775A72F6.1	5e-58	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-09	FAR1-related sequence 10

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]