PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_9AE0ED26A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 76aa    MW: 9167.52 Da    PI: 10.6905
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_9AE0ED26A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.55.8e-18174301374
                   GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            eg+er+er et+++W+ r  +aGF++vpl ++++k+a++ + k + + + v+e+++++++gWk+r + ++S W+
  Traes_5AL_9AE0ED26A.1   1 EGTERVERPETYKQWQVRNLRAGFRQVPLLQETVKKARYKVIKSYHRDFFVDEDNKWMLQGWKGRVIGALSTWK 74 
                            799*************************************99999899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.338154IPR005202Transcription factor GRAS
PfamPF035142.0E-15174IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
EGTERVERPE TYKQWQVRNL RAGFRQVPLL QETVKKARYK VIKSYHRDFF VDEDNKWMLQ  60
GWKGRVIGAL STWKPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507921e-109AK250792.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf94i06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179545.11e-45scarecrow-like protein 9
SwissprotO809336e-28SCL9_ARATH; Scarecrow-like protein 9
SwissprotQ9LTI55e-28SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A3B6KT411e-46A0A3B6KT41_WHEAT; Uncharacterized protein
TrEMBLA0A446TLK61e-46A0A446TLK6_TRITD; Uncharacterized protein
STRINGTraes_5AL_9AE0ED26A.16e-50(Triticum aestivum)
STRINGTraes_5BL_DF8EC4A24.22e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5052622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.12e-30GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]