PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_D1807A4E0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 106aa    MW: 11751.4 Da    PI: 9.7096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_D1807A4E0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-153173246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           g +T eEd l++ + +  G++ W+ Ia++++ gRt++++k++w++
  Traes_5AL_D1807A4E0.1 31 GQFTDEEDSLILSLYADIGSK-WSVIAAKLP-GRTDNDVKNHWNT 73
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.437124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-11836IPR009057Homeodomain-like
SuperFamilySSF466896.45E-241079IPR009057Homeodomain-like
PROSITE profilePS5129421.5162579IPR017930Myb domain
SMARTSM007173.8E-122977IPR001005SANT/Myb domain
PfamPF002491.2E-133173IPR001005SANT/Myb domain
CDDcd001676.58E-103375No hitNo description
Gene3DG3DSA:1.10.10.601.1E-193776IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MTLPHKAGLN RCGKSCRLRW LNYLRPALRH GQFTDEEDSL ILSLYADIGS KWSVIAAKLP  60
GRTDNDVKNH WNTKLKKRHL LAMAPSPTPP TPATDSPSAS EADESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A5e-201010134131MYB3
3zqc_D5e-201010134131MYB3
3zqc_G5e-201010134131MYB3
3zqc_J5e-201010134131MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177100.14e-69transcription factor RAX2-like
SwissprotQ9SJL75e-43RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A3B6KUD13e-71A0A3B6KUD1_WHEAT; Uncharacterized protein
STRINGTraes_5AL_D1807A4E0.14e-73(Triticum aestivum)
STRINGTRIUR3_05615-P12e-71(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.14e-42MYB family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]