PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_D369204D3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 86aa    MW: 10027.4 Da    PI: 11.4897
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_D369204D3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.33.6e-2617421103
                            ESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  21 wsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                            w e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ ll+ i+r+k +
  Traes_5AL_D369204D3.1   1 WGEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQGLLSGIRRRKAT 74 
                            999********************************************99.........**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004471.3E-22171IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.8E-27171IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-24171IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-28171IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-92032IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
WGEQGRSFVV WKPVELARDL LPLHFKHCNF SSFVRQLNTY GFRKVVPDRW EFANENFRRG  60
EQGLLSGIRR RKATATTTTP QSSKTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-1517524109Heat shock factor protein 2
5d8l_B2e-1517524109Heat shock factor protein 2
5d8l_D2e-1517524109Heat shock factor protein 2
5d8l_F2e-1517524109Heat shock factor protein 2
5d8l_H2e-1517524109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3662311e-124AK366231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2041F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578229.12e-52heat stress transcription factor B-1
SwissprotQ67TP93e-49HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A3B6KJH13e-56A0A3B6KJH1_WHEAT; Uncharacterized protein
TrEMBLA0A446T4N43e-56A0A446T4N4_TRITD; Uncharacterized protein
TrEMBLM7YQN67e-56M7YQN6_TRIUA; Heat stress transcription factor B-1
STRINGTraes_5AL_D369204D3.15e-58(Triticum aestivum)
STRINGTRIUR3_26103-P11e-56(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-35heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]