PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_D98C7CE92.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 140aa    MW: 15441.2 Da    PI: 8.7737
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_D98C7CE92.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.11.8e-321772156
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                           k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Traes_5AL_D98C7CE92.1 17 KTRRCWSPELHRHFVAALHQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 72
                           68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-291475IPR009057Homeodomain-like
PROSITE profilePS5129413.7721474IPR017930Myb domain
SuperFamilySSF466891.52E-171575IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-261772IPR006447Myb domain, plants
PfamPF002492.2E-71970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MPPPGPGLQT HEQQSRKTRR CWSPELHRHF VAALHQLGGP QVATPKQIRE VMKVDGLTND  60
EVKSHLQKYR LHNQRCPSSS SASHPVMLVG DLWAHQEQSS SQSRSPEGPL QLSVSGVAVS  120
ALTGSDSSEE DDRSVGYSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-151770154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-151770154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-151770154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-151770154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-151775260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519440.0JF951944.1 Triticum aestivum clone TaMYB61 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199780.14e-79uncharacterized protein LOC109785601
SwissprotQ9FX849e-33HHO6_ARATH; Transcription factor HHO6
SwissprotQ9ZQ853e-32EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A3B6KQ183e-96A0A3B6KQ18_WHEAT; Uncharacterized protein
TrEMBLA0A446TFX63e-96A0A446TFX6_TRITD; Uncharacterized protein
TrEMBLA0A446TG973e-96A0A446TG97_TRITD; Uncharacterized protein
TrEMBLA0A446TGA43e-96A0A446TGA4_TRITD; Uncharacterized protein
TrEMBLG9DRA73e-96G9DRA7_WHEAT; MYB-related protein
STRINGTraes_5AL_D98C7CE92.12e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-33G2-like family protein
Publications ? help Back to Top
  1. Zhang L,Zhao G,Jia J,Liu X,Kong X
    Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress.
    J. Exp. Bot., 2012. 63(1): p. 203-14
    [PMID:21934119]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]