PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_ED57961C7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 45aa    MW: 5123.95 Da    PI: 10.4666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_ED57961C7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-0811441048
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
                    HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48
                           +rRR++iN+++  L++l+P+      +K++ +++Le+Av
  Traes_5AL_ED57961C7.1 11 KRRREKINDRLRVLQKLVPNG-----TKVDLSTMLEEAV 44
                           9******************97.....7999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.474145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8644IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-9644IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-51044No hitNo description
PfamPF000107.2E-61144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 45 aa     Download sequence    Send to blast
SAADPQSLYA KRRREKINDR LRVLQKLVPN GTKVDLSTML EEAVL
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167813.14e-22transcription factor bHLH54-like
SwissprotQ7XHI96e-19BH084_ARATH; Transcription factor bHLH84
SwissprotQ84WK07e-19BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A3B6KQ132e-21A0A3B6KQ13_WHEAT; Uncharacterized protein
TrEMBLA0A446TFW92e-21A0A446TFW9_TRITD; Uncharacterized protein
TrEMBLA0A453LV375e-23A0A453LV37_AEGTS; Uncharacterized protein
STRINGTraes_5AL_ED57961C7.13e-24(Triticum aestivum)
STRINGTraes_5BL_E1D1D198E.16e-24(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  4. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]