PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_EDF2DD187.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 240aa    MW: 26332.7 Da    PI: 4.4303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_EDF2DD187.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-1166108855
                            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +Er RR+r+N+++  +r ++P+      +K++Ka+i + A+ YI +Lq
  Traes_5AL_EDF2DD187.1  66 NERDRRRRLNEKLYAIRGVVPNI-----TKMNKASIIQDAIAYIEELQ 108
                            7*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.68E-1257112No hitNo description
PROSITE profilePS5088813.60558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1463114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1264113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-865108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1265113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MESDMEISLD FSWETPSFFE LCDADSMHLP AEDSLSCLYE HGDSTSSPDG ANSGLTRRWA  60
GRNMLNERDR RRRLNEKLYA IRGVVPNITK MNKASIIQDA IAYIEELQEQ ERQILAAPGT  120
DGCAAVVQAD STVDDGVGSP PRTTSASSIC SPSPHPVQIL ELEVMQVAED LAVVNVRHRK  180
AQEAMAKVYG VLESLCLNVI TASVTVVSDN IVHNMFIETD GMDCAQTIKE MVKSHSVISM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572940.0AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177107.11e-163transcription factor bHLH35-like
TrEMBLA0A446TQB81e-176A0A446TQB8_TRITD; Uncharacterized protein
STRINGTraes_5AL_EDF2DD187.11e-179(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-22bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]