PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_F72B730FE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 281aa    MW: 30775.4 Da    PI: 6.4036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_F72B730FE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09116164455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+  Er RR+ri +++  L++l+P +   ++    Ka iL + ++Y++sLq
  Traes_5AL_F72B730FE.2 116 SHSLSERVRRERISERMRMLQSLVPGC---DKVVTGKALILDEIINYVQSLQ 164
                            799************************...8888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17110180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-10110168No hitNo description
PROSITE profilePS5088815.294112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6116164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-16116177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED APAAAAASRE GSSVVLDTPL VATASVEKKR  60
KPKEDTTSLN SAHSKETKES TRKRGGKKQG KEMDDDEEEP KGYIHVRARR GQATDSHSLS  120
ERVRRERISE RMRMLQSLVP GCDKVVTGKA LILDEIINYV QSLQNQVEFL SMRIASLSPV  180
VYGFGMESEA AFSDQSQKIE GMFHDAAALP TGPPMNRSSS PAPYQAMMDT GTSSSSPTYS  240
LQGTQDNGSS SSSYMMQTVG EPRHELFNQV VFSNYMCSFQ Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654680.0AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166246.10.0transcription factor bHLH137-like
TrEMBLA0A3B6KLE30.0A0A3B6KLE3_WHEAT; Uncharacterized protein
TrEMBLA0A446T8A20.0A0A446T8A2_TRITD; Uncharacterized protein
STRINGTraes_5AL_F72B730FE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-36bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]