PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_0267719D3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 205aa    MW: 22424.7 Da    PI: 9.1243
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_0267719D3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.83.9e-1075109135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +Cg+++ plW +g  g +++C aCG++y+k +l
  Traes_5AS_0267719D3.1  75 CLHCGSSDPPLWIEGLMGRREVCTACGMRYKKGRL 109
                            99******************************986 PP
2GATA43.54.3e-14179205127
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCG 27 
                            C++Cg+++Tp+WR+gp g  tLCnaCG
  Traes_5AS_0267719D3.1 179 CQHCGSSETPQWREGPKGRATLCNACG 205
                            **************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.5E-4420IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-768109No hitNo description
PROSITE profilePS5011410.39669105IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-569119IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.3E-870107IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.0E-975109IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-10171205No hitNo description
PROSITE profilePS5011412.796173205IPR000679Zinc finger, GATA-type
SMARTSM004018.1E-4173205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-11177205IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.97E-10178205No hitNo description
PfamPF003206.6E-12179205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGTLCNAC GVWYSKNGTL PEHRPVASPI VDSPLESPIW EPEVPGAIYL VRKSATERMP  60
PRTEAAPAPR PGTSCLHCGS SDPPLWIEGL MGRREVCTAC GMRYKKGRLL PECRPAECSV  120
TDSQQESPVI NSPPESPIWE PEAPPSVHLP RKPSKKKKRR RSRSEAPSAP WPANKGKRCQ  180
HCGSSETPQW REGPKGRATL CNACG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159KKKKRR
2154160KKKKRRR
3155160KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550520.0AK355052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015E18.
GenBankAK3634380.0AK363438.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152090.11e-115uncharacterized protein LOC109737355 isoform X2
TrEMBLA0A287QV271e-131A0A287QV27_HORVV; Uncharacterized protein
TrEMBLA0A287QVA21e-132A0A287QVA2_HORVV; Uncharacterized protein
TrEMBLA0A287QVD71e-131A0A287QVD7_HORVV; Uncharacterized protein
TrEMBLF2CTV01e-132F2CTV0_HORVV; Predicted protein
TrEMBLM0YP851e-132M0YP85_HORVV; Uncharacterized protein
STRINGTraes_5AS_0267719D3.11e-144(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.13e-12GATA transcription factor 14
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]