PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_029A65B0A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 116aa    MW: 13092 Da    PI: 11.1499
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_029A65B0A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           +ri+n +nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly+++s
  Traes_5AS_029A65B0A.2  9 ERIDNATNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFAS 59
                           69***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.305161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-30278IPR002100Transcription factor, MADS-box
CDDcd002652.07E-40277No hitNo description
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGRGKIANER IDNATNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFASS  60
RGMEAILERY QEAKQEHCGV LNPTSEAKIM DPASSPWRLR GKKRRRRNFS SSLSQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22177176MEF2C
5f28_B3e-22177176MEF2C
5f28_C3e-22177176MEF2C
5f28_D3e-22177176MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029011e-142AM502901.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31A (WM31A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171925.11e-56MADS-box transcription factor 25-like
SwissprotQ84NC54e-44MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A3B6U8J44e-58A0A3B6U8J4_WHEAT; Uncharacterized protein
STRINGTraes_5AS_029A65B0A.29e-81(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-27AGAMOUS-like 44
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]