PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AS_178725FAF.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 211aa MW: 22699 Da PI: 8.4369

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AS_178725FAF.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1.1e-32	107	163	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF Traes_5AS_178725FAF.2 107 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 163 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-35	105	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.934	106	166	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.1E-27	108	163	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	109	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	111	131	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	140	163	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MTSVADGVSG DHRADEQQKQ AAAQGNQEEA PATSIGSQAM VATPSTDYVT PYGHQEACHA 60 MQGQIAYPTV DPFYGSLYAA YGGQPMMHPP MVGMHAAAIP LPTDAIEEPV YVNAKQYNAI 120 LRRRQSRAKA ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK 180 DKQNGVAPRS SGQSSQSPKG ATSADKSGNH E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-22	106	179	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078755	0.0	KM078755.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-B5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186179.1	1e-154	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_020186180.1	1e-154	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	6e-43	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A446SP68	1e-154	A0A446SP68_TRITD; Uncharacterized protein
STRING	Traes_5AS_178725FAF.2	1e-155	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-39	nuclear factor Y, subunit A7

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]