PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_31C2540C0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 253aa    MW: 28430.6 Da    PI: 9.7161
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_31C2540C0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY186.71.2e-577122622170
                  YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee...lleelkveeenlksnv..ekeesastsvsseklse 103
                            + vsvP +s++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +   +    +++++ ++  +  ++++s+s++ ++ ++  
  Traes_5AS_31C2540C0.2  71 VQVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAPQVQESSLSKpngMNSFIRDHSSVYNNPEfgSSSSSSSSKFRMPTMMF 158
                            579**************************98775426666777777665546644444444444443331133334444445555555 PP

                  YABBY 104 nedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            ++++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Traes_5AS_31C2540C0.2 159 SSQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 226
                            55555555444479****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-5871226IPR006780YABBY protein
SuperFamilySSF470954.19E-8171220IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-5173220IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQLVKVETCK QSETKATRAS YTPGLKSNRR PFPIHLDLWF PPPCTCLFAL DQHMLWILTY  60
GWLILGILVC VQVSVPGNSM LNIVTVRCGH CTNLLSVSLR GQMHSPVPPA PQVQESSLSK  120
PNGMNSFIRD HSSVYNNPEF GSSSSSSSSK FRMPTMMFSS QNDLLQEQTL HARPPEKRQR  180
VPSAYNRFIK EEIRRIKANN PDISHREAFS TAAKNWAHYP NIHFGLNPER DDGKRLAVDD  240
AAPAAKKIHG FCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0091060.0BT009106.1 Triticum aestivum clone wkm2n.pk008.p10:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201583.11e-117protein YABBY 6-like
SwissprotQ2QM173e-72YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A446SN660.0A0A446SN66_TRITD; Uncharacterized protein
STRINGTraes_5AS_31C2540C0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-47YABBY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]