PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_4125EE078.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 319aa    MW: 35760.4 Da    PI: 7.6253
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_4125EE078.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.2e-14239340
                    TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                           +++C+Ckks+Clk+YC Cfa+g++Cse C C+ C Nk+
  Traes_5AS_4125EE078.2  2 CRTCSCKKSRCLKLYCVCFASGSQCSELCGCDPCYNKT 39
                           689*********************************97 PP
2TCR45.61.4e-1478113439
                    TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  Traes_5AS_4125EE078.2  78 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 113
                            79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163426.9781115IPR005172CRC domain
SMARTSM011141.6E-6141IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.9E-10338IPR005172CRC domain
SMARTSM011141.7E-1177116IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-1178112IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
GCRTCSCKKS RCLKLYCVCF ASGSQCSELC GCDPCYNKTI HGVQQNTPPG LPLQVVRPAE  60
GGQNSAEFAR YQIDFFRRKC TCKKSGCLKK YCDCYQGGAG CSINCKCDDC KNPYGKKVGV  120
ILDGKSILAA PTPTPNERNG AEVISSDDDD DDEDDYYMNR PLSPIPPSPV SRESSFQQET  180
LVGVEVHTVN GHLYPKPLTQ VRPESWQLSR RPAEEARGDQ WRYMRRPSED GTSDAMEGHA  240
DPKFHHQRDS NNKQRESHAD NRFSIPRCVE VMNGMADLSP VDKSLAPDVF LDPSNREIFL  300
SLSVDIRTMW LKRKMRSLV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754080.0AK375408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3093G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189112.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A3B6KDJ60.0A0A3B6KDJ6_WHEAT; Uncharacterized protein
TrEMBLA0A446SPU10.0A0A446SPU1_TRITD; Uncharacterized protein
STRINGTraes_5AS_4125EE078.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-33TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]