PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_433D3E526.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 136aa    MW: 15113.4 Da    PI: 10.5028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_433D3E526.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-3170127359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ ++p ++++tYegeH h+
  Traes_5AS_433D3E526.1  70 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPAMLIVTYEGEHSHN 127
                            9************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.8E-192166IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-3356128IPR003657WRKY domain
PROSITE profilePS5081129.48263129IPR003657WRKY domain
SuperFamilySSF1182902.75E-2766128IPR003657WRKY domain
SMARTSM007742.1E-3668128IPR003657WRKY domain
PfamPF031066.4E-2770126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRLLGGPAAS DPLNVRQCAP KRRCAGRGED GSGKCTTGGK CHCSKRRKLR IKRSIKVPAI  60
SNKISDIPPD EYSWRKYGQK PIKGSPHPRG YYKCSTVRGC PARKHVERCV DEPAMLIVTY  120
EGEHSHNRLP TQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-2156130275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747470.0AK374747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163784.16e-96protein WRKY1-like
SwissprotQ32SG42e-65WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A3B6KCU11e-95A0A3B6KCU1_WHEAT; Uncharacterized protein
TrEMBLA0A446SQF41e-95A0A446SQF4_TRITD; Uncharacterized protein
STRINGTraes_5AS_433D3E526.19e-96(Triticum aestivum)
STRINGTraes_5DS_D83DEA9B0.12e-95(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-53WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]