PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AS_4B8974198.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 260aa MW: 28405.6 Da PI: 4.8717

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AS_4B8974198.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	3e-22	127	247	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtra 56 Yn+Y+ ++GFs+++++s+k ++ge +k++fvC+k k++ ++ ++k+r++ + Traes_5AS_4B8974198.2 127 YNAYSLQMGFSIKMNSSRKDLKTGELIKQQFVCNKFRKPDVDDGGaekipvlddiveqekndnedeaivfldddskgkkRSKKRKRDK 214 *********************************999999888899**************************98889999999 PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 +tgCkak+ vk dg+wev+ +++eHnH+l+ Traes_5AS_4B8974198.2 215 IVQTGCKAKMIVKVI-DGRWEVIYFVSEHNHPLV 247 ***********.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-20	127	247	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MIDLNEVPAE NNDDPLYCTQ HGSGNAEFVA ESPNPPIIQR VDGAATEAME ADGKSSHGGR 60 APGSTQVPAA IATGDAHTLD GTGAAGDTGG TVGNGLGAEN DDEAWSQPKE PYVGMRFDTL 120 EDAKVHYNAY SLQMGFSIKM NSSRKDLKTG ELIKQQFVCN KFRKPDVDDG GAEKIPVLDD 180 IVEQEKNDNE DEAIVFLDDD SKGKKRSKKR KRDKIVQTGC KAKMIVKVID GRWEVIYFVS 240 EHNHPLVDKP CLTKYLQSHQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194049.1	7e-64	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446PCM9	1e-151	A0A446PCM9_TRITD; Uncharacterized protein
STRING	Traes_5AS_4B8974198.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-11	FAR1 family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]