PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_710247B67.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 195aa    MW: 22768.2 Da    PI: 6.9484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_710247B67.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS166.32.4e-512189187374
                   GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                            e+l+ e+L+++p+E+l+Vn+ +q ++l+desv les+rd vLk +++++P+ ++++  + + +++ F++rf e l yysalfd l+++
  Traes_5AS_710247B67.1   2 ESLRKEDLKIDPDEVLIVNSLFQFKNLMDESVVLESPRDVVLKNIRKMRPHTFIHAIVNGSFSAPFFVTRFREVLFYYSALFDVLDTT 89 
                            678999********************************************************************************** PP

                   GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                             pr++e+r+ +E+ +lgr++ nv+aceg++r+er et+++W+ r ++aG+k +pl+ ++ + a+  +++++ + + ++ ++++l++gW
  Traes_5AS_710247B67.1  90 TPRDNEQRMLIEQNILGRAALNVIACEGTDRVERPETYKQWQVRNQRAGLKLLPLNPEVIELARDKVKNCYHKDFVIDIDQHWLLQGW 177
                            ***********************************************************************889************** PP

                   GRAS 363 kdrpLvsvSaWr 374
                            k+r L+++S W+
  Traes_5AS_710247B67.1 178 KGRILYAISTWT 189
                            ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.8311169IPR005202Transcription factor GRAS
PfamPF035148.5E-492189IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MESLRKEDLK IDPDEVLIVN SLFQFKNLMD ESVVLESPRD VVLKNIRKMR PHTFIHAIVN  60
GSFSAPFFVT RFREVLFYYS ALFDVLDTTT PRDNEQRMLI EQNILGRAAL NVIACEGTDR  120
VERPETYKQW QVRNQRAGLK LLPLNPEVIE LARDKVKNCY HKDFVIDIDQ HWLLQGWKGR  180
ILYAISTWTA NDASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-158153234381Protein SHORT-ROOT
5b3h_E4e-158153234381Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3579960.0AK357996.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160240.11e-138scarecrow-like protein 34
SwissprotP0C8843e-74SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A446SRT61e-138A0A446SRT6_TRITD; Uncharacterized protein
TrEMBLA0A446SS031e-140A0A446SS03_TRITD; Uncharacterized protein
TrEMBLA0A446TXV41e-138A0A446TXV4_TRITD; Uncharacterized protein
TrEMBLA0A446TXW31e-140A0A446TXW3_TRITD; Uncharacterized protein
TrEMBLA0A446TXX41e-139A0A446TXX4_TRITD; Uncharacterized protein
STRINGEMT251751e-139(Aegilops tauschii)
STRINGTraes_5AS_710247B67.11e-144(Triticum aestivum)
STRINGTraes_5BS_ED54C58C5.11e-138(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2228967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-76GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]